Index

A

ada (class in tuna.io.adhoc_ada) adhoc (class in tuna.io.adhoc) aggregate_concentric_rings() (tuna.tools.spectral_rings_fitter.rings_finder method) aggregate_fits() (tuna.tools.spectral_rings_fitter.rings_finder method)

airy_fitter (class in tuna.models.airy) airy_plane() (in module tuna.models.airy) arc_segmentation_center_finder (class in tuna.tools.phase_map.find_image_center_by_arc_segmentation)

B

b_ratio_estimator (class in tuna.tools.estimate_b_ratio) backend (class in tuna.console.backend) barycenter_detector (class in tuna.tools.barycenter)

barycenter_fast (class in tuna.tools.barycenter) barycenter_geometry() (in module tuna.tools.barycenter) barycenter_polynomial_fit() (in module tuna.tools.barycenter)

C

calculate_distance() (in module tuna.tools.geometry) calibrate() (tuna.tools.wavelength.wavelength_calibration.wavelength_calibrator method) can (class in tuna.io.can) check_ACK() (tuna.zeromq.zmq_proxy.zmq_proxy method) check_mysql_connection() (tuna.io.database.database method) check_tables() (tuna.io.database.database method) circle() (in module tuna.tools.spectral_rings_fitter) close() (tuna.zeromq.zmq_proxy.zmq_proxy method) close_mysql_connection() (tuna.io.database.database method) close_socket() (tuna.zeromq.zmq_client.zmq_client method)

configure_tables() (tuna.io.database.database method) construct_ring_center() (tuna.tools.spectral_rings_fitter.rings_finder method) continuum_detector() (in module tuna.tools.continuum) convert_ndarray_into_table() (tuna.io.can.can method) convert_table_into_ndarray() (tuna.io.can.can method) create_barycenter() (tuna.tools.barycenter.barycenter_detector method) create_barycenter_using_peak() (tuna.tools.barycenter.barycenter_fast method) create_fsr_from_radii() (tuna.tools.fsr.fsr method) create_model_map_by_Polynomial2D() (tuna.models.parabola.parabolic_fitter method) create_unwrapped_phase_map() (tuna.pipelines.calibration_lamp_high_resolution.reducer method)

D

database (class in tuna.io.database) dequeue() (tuna.io.database.database method) detect_noise() (in module tuna.tools.phase_map.noise)

detect_ring_borders() (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) detect_signalless() (tuna.tools.phase_map.noise.noise_detector method) detector (class in tuna.tools.continuum)

E

enqueue() (tuna.io.database.database method) estimate() (tuna.tools.estimate_b_ratio.b_ratio_estimator method)

estimate_b_ratio() (in module tuna.tools.estimate_b_ratio) execute() (tuna.tools.spectral_rings_fitter.rings_finder method)

F

file_reader (class in tuna.io.file_reader) find_center() (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) (tuna.tools.phase_map.find_image_center_by_symmetry.image_center_by_symmetry method) find_image_center_by_symmetry() (in module tuna.tools.phase_map.find_image_center_by_symmetry) find_lowest_nonnull_percentile() (in module tuna.tools.find_lowest_nonnull_percentile) find_max_pair() (tuna.tools.spectral_rings_fitter.rings_finder method) find_min_pixel() (tuna.tools.spectral_rings_fitter.rings_finder method) find_rings() (in module tuna.tools.spectral_rings_fitter) find_upper_percentile() (tuna.tools.spectral_rings_fitter.rings_finder method) fit_airy() (in module tuna.models.airy)

fit_circle() (in module tuna.tools.spectral_rings_fitter) fit_circles() (tuna.tools.spectral_rings_fitter.rings_finder method) fits (class in tuna.io.fits) fliplr() (tuna.io.can.can method) flipud() (tuna.io.can.can method) fsr (class in tuna.tools.fsr) fsr_mapper() (in module tuna.tools.fsr) function_header() (in module tuna.log.utils) function_name() (in module tuna.log.utils)

G

generate_borders_map_from_wrapped() (tuna.tools.phase_map.ring_borders.ring_border_detector method) get() (tuna.io.lock.lock method) get_array() (tuna.io.adhoc.adhoc method) (tuna.io.adhoc_ada.ada method) (tuna.io.fits.fits method) get_center() (tuna.models.parabola.parabolic_fitter method) (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) (tuna.tools.phase_map.find_image_center_by_symmetry.image_center_by_symmetry method) get_center_of_mass() (tuna.tools.barycenter.barycenter_detector method) get_connected_points() (in module tuna.tools.get_connected_points) get_connected_region() (in module tuna.tools.get_connected_region) get_full_module_path() (in module tuna.plugins.registry) get_fwhh() (tuna.tools.barycenter.barycenter_fast method) get_hash_from_array() (in module tuna.tools.hash_functions)

get_image_ndarray() (tuna.io.file_reader.file_reader method) get_left_channel() (tuna.tools.barycenter.barycenter_fast method) get_metadata() (in module tuna.io.metadata_parser) (tuna.io.adhoc_ada.ada method) (tuna.io.fits.fits method) (tuna.io.metadata_parser.metadata_parser method) get_most_distant_points() (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) get_photons() (tuna.io.adhoc_ada.ada method) get_pixel_neighbours() (in module tuna.tools.get_pixel_neighbours) get_random_chord_bisector() (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) get_random_point_in_border() (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) get_right_channel() (tuna.tools.barycenter.barycenter_fast method) get_trailer() (tuna.io.adhoc.adhoc method)

I

image_center_by_symmetry (class in tuna.tools.phase_map.find_image_center_by_symmetry) include_noise_circle() (in module tuna.tools.phase_map.noise) info() (tuna.io.can.can method)

insert_record() (tuna.io.database.database method) insert_record_processor() (tuna.io.database.database method) is_readable() (tuna.io.file_reader.file_reader method)

L

least_circle() (in module tuna.tools.spectral_rings_fitter) least_mpyfit() (in module tuna.models.airy) let() (tuna.io.lock.lock method)

line_number() (in module tuna.log.utils) lock (class in tuna.io.lock) log() (in module tuna.tools.plot)

M

map_distances_onto_borders() (tuna.tools.phase_map.ring_borders.ring_border_detector method) median_of_lowest_channels() (in module tuna.tools.continuum)

metadata_parser (class in tuna.io.metadata_parser)

N

noise_detector (class in tuna.tools.phase_map.noise)

O

open_mysql_connection() (tuna.io.database.database method) open_socket() (tuna.zeromq.zmq_client.zmq_client method)

output_exception() (in module tuna.console.exceptions)

P

parabolic_fitter (class in tuna.models.parabola) pixel_profiler() (in module tuna.pipelines.calibration_lamp_high_resolution) plot() (in module tuna.tools.plot) plot_high_res() (in module tuna.tools.plot) plot_spectral_rings() (in module tuna.tools.plot)

plot_sympy_line() (tuna.tools.spectral_rings_fitter.rings_finder method) position_is_valid_pixel_address() (in module tuna.tools.phase_map.noise) print_fwhh() (tuna.tools.barycenter.barycenter_fast method) process() (tuna.io.database.database method)

R

read() (in module tuna.io.convenience) (tuna.io.adhoc.adhoc method) (tuna.io.adhoc_ada.ada method) (tuna.io.can.can method) (tuna.io.fits.fits method) reducer (class in tuna.pipelines.calibration_lamp_high_resolution) refresh_database() (tuna.tools.phase_map.noise.noise_detector method) register_poller() (tuna.zeromq.zmq_client.zmq_client method) registry() (in module tuna.plugins.registry)

remove_lumped_pixel_sets() (tuna.tools.spectral_rings_fitter.rings_finder method) ridgeness() (tuna.tools.spectral_rings_fitter.rings_finder method) ring_border_detector (class in tuna.tools.phase_map.ring_borders) rings_finder (class in tuna.tools.spectral_rings_fitter) run() (in module tuna.plugins.registry) (tuna.console.backend.zmq_daemon method) (tuna.io.database.database method) (tuna.io.metadata_parser.metadata_parser method) (tuna.models.airy.airy_fitter method) (tuna.models.parabola.parabolic_fitter method) (tuna.pipelines.calibration_lamp_high_resolution.reducer method) (tuna.tools.barycenter.barycenter_detector method) (tuna.tools.barycenter.barycenter_fast method) (tuna.tools.continuum.detector method) (tuna.tools.fsr.fsr method) (tuna.tools.phase_map.find_image_center_by_arc_segmentation.arc_segmentation_center_finder method) (tuna.tools.phase_map.noise.noise_detector method) (tuna.tools.phase_map.ring_borders.ring_border_detector method) (tuna.tools.wavelength.wavelength_calibration.wavelength_calibrator method) (tuna.zeromq.zmq_proxy.zmq_proxy method)

S

script_name() (in module tuna.log.utils) segment() (tuna.tools.spectral_rings_fitter.rings_finder method) select_record() (tuna.io.database.database method) send() (tuna.zeromq.zmq_client.zmq_client method) separate_rings() (tuna.tools.spectral_rings_fitter.rings_finder method)

set_path() (in module tuna.log.utils) start() (tuna.console.backend.backend method) status() (in module tuna.io.system) stop() (tuna.io.database.database method) suppress_channel() (in module tuna.tools.continuum)

T

tuna.console (module) tuna.console.backend (module) tuna.console.exceptions (module) tuna.io (module) tuna.io.adhoc (module) tuna.io.adhoc_ada (module) tuna.io.can (module) tuna.io.convenience (module) tuna.io.database (module) tuna.io.file_reader (module) tuna.io.fits (module) tuna.io.lock (module) tuna.io.metadata_parser (module) tuna.io.system (module) tuna.log (module) tuna.log.utils (module) tuna.models (module) tuna.models.airy (module) tuna.models.parabola (module) tuna.pipelines (module) tuna.pipelines.calibration_lamp_high_resolution (module) tuna.plugins (module) tuna.plugins.registry (module) tuna.repo (module)

tuna.test (module) tuna.tools (module) tuna.tools.barycenter (module) tuna.tools.continuum (module) tuna.tools.estimate_b_ratio (module) tuna.tools.find_lowest_nonnull_percentile (module) tuna.tools.fsr (module) tuna.tools.geometry (module) tuna.tools.get_connected_points (module) tuna.tools.get_connected_region (module) tuna.tools.get_pixel_neighbours (module) tuna.tools.hash_functions (module) tuna.tools.phase_map (module) tuna.tools.phase_map.find_image_center_by_arc_segmentation (module) tuna.tools.phase_map.find_image_center_by_symmetry (module) tuna.tools.phase_map.noise (module) tuna.tools.phase_map.ring_borders (module) tuna.tools.plot (module) tuna.tools.spectral_rings_fitter (module) tuna.tools.wavelength (module) tuna.tools.wavelength.wavelength_calibration (module) tuna.zeromq (module) tuna.zeromq.zmq_client (module) tuna.zeromq.zmq_proxy (module)

U

update() (tuna.io.can.can method) update_record() (tuna.io.database.database method)

update_record_processor() (tuna.io.database.database method)

V

verbose() (in module tuna.log.utils)

verify_parabolic_model() (tuna.pipelines.calibration_lamp_high_resolution.reducer method)

W

wavelength_calibrator (class in tuna.tools.wavelength.wavelength_calibration) write() (in module tuna.io.convenience) (tuna.io.fits.fits method)

write_metadata_table() (tuna.io.fits.fits method) write_photons_table() (tuna.io.fits.fits method)

Z

zmq_client (class in tuna.zeromq.zmq_client) zmq_daemon (class in tuna.console.backend)

zmq_proxy (class in tuna.zeromq.zmq_proxy)